X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 5HIW 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2910.1 MES monohydrate, pH 6.5, with 1.6 M magnesium sulphate heptahydrate
Crystal Properties
Matthews coefficientSolvent content
3.8467.99

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 234.56α = 90
b = 234.56β = 90
c = 96.43γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2012-05-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-40.9393ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.6769.9399.70.1210.9924.85.58615836.6
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.672.7297.90.5551.34.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5HIW2.6769.9381873426299.670.18910.187310.2232RANDOM44.066
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.47-0.24-0.471.53
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.753
r_dihedral_angle_4_deg21.607
r_dihedral_angle_3_deg17.158
r_long_range_B_refined9.882
r_long_range_B_other9.882
r_scangle_other7.612
r_dihedral_angle_1_deg6.575
r_mcangle_it5.976
r_mcangle_other5.976
r_scbond_it4.983
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.753
r_dihedral_angle_4_deg21.607
r_dihedral_angle_3_deg17.158
r_long_range_B_refined9.882
r_long_range_B_other9.882
r_scangle_other7.612
r_dihedral_angle_1_deg6.575
r_mcangle_it5.976
r_mcangle_other5.976
r_scbond_it4.983
r_scbond_other4.907
r_mcbond_it3.895
r_mcbond_other3.89
r_angle_refined_deg1.92
r_angle_other_deg1.583
r_chiral_restr0.1
r_bond_refined_d0.017
r_gen_planes_refined0.011
r_bond_other_d0.009
r_gen_planes_other0.008
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms12130
Nucleic Acid Atoms
Solvent Atoms337
Heterogen Atoms359

Software

Software
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
Aimlessdata scaling
MOLREPphasing