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GlgE isoform 1 from Streptomyces coelicolor D394A mutant co-crystallised with maltodextrin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3ZST
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 NULL
Crystal Properties Matthews coefficient Solvent content 3.33 63.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 115.11 α = 90 b = 115.11 β = 90 c = 311.36 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2011-07-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.978 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 81.4 97.1 0.083 0.999 17.5 13.1 147828 26.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2 79.9 0.915 0.589 1.2 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3ZST 1.95 81.4 140419 7409 96.9 0.178 0.1771 0.1874 0.1945 0.202 RANDOM 33.996
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.57 0.57 -1.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.886 r_dihedral_angle_4_deg 18.852 r_dihedral_angle_3_deg 11.791 r_dihedral_angle_1_deg 6.03 r_angle_refined_deg 1.405 r_mcangle_it 1.384 r_angle_other_deg 0.929 r_mcbond_it 0.857 r_mcbond_other 0.856 r_chiral_restr 0.081
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.886 r_dihedral_angle_4_deg 18.852 r_dihedral_angle_3_deg 11.791 r_dihedral_angle_1_deg 6.03 r_angle_refined_deg 1.405 r_mcangle_it 1.384 r_angle_other_deg 0.929 r_mcbond_it 0.857 r_mcbond_other 0.856 r_chiral_restr 0.081 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10224 Nucleic Acid Atoms Solvent Atoms 1145 Heterogen Atoms 354
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction PHASER phasing XDS data reduction