5LFY

Zinc bound dimer of the fragment of human amyloid-beta peptide with Alzheimer's disease pathogenic Taiwanese mutation D7H


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D DQF-COSY1.4 mM D7H_Abeta(1-10), 2.8 mM ZnCl2, 10 mM [U-99% 2D] bis-Tris-d1990% H2O/10% D2O3 mM7.01 atm278Bruker AVANCE 600
22D 1H-1H TOCSY1.4 mM D7H_Abeta(1-10), 2.8 mM ZnCl2, 10 mM [U-99% 2D] bis-Tris-d1990% H2O/10% D2O3 mM7.01 atm278Bruker AVANCE 600
32D 1H-1H NOESY1.4 mM D7H_Abeta(1-10), 2.8 mM ZnCl2, 10 mM [U-99% 2D] bis-Tris-d1990% H2O/10% D2O3 mM7.01 atm278Bruker AVANCE 600
112D 1H-1H NOESY1.4 mM D7H_Abeta(1-10), 2.8 mM ZnCl2, 10 mM [U-99% 2D] bis-Tris-d19100% D2O3 mM7.01 atm278Bruker AVANCE 600
42D 1H-15N HSQC1.4 mM D7H_Abeta(1-10), 2.8 mM ZnCl2, 10 mM [U-99% 2D] bis-Tris-d1990% H2O/10% D2O3 mM7.01 atm278Bruker AVANCE 600
52D 1H-13C HSQC aliphatic1.4 mM D7H_Abeta(1-10), 2.8 mM ZnCl2, 10 mM [U-99% 2D] bis-Tris-d1990% H2O/10% D2O3 mM7.01 atm278Bruker AVANCE 600
62D 1H-13C HSQC aromatic1.4 mM D7H_Abeta(1-10), 2.8 mM ZnCl2, 10 mM [U-99% 2D] bis-Tris-d1990% H2O/10% D2O3 mM7.01 atm278Bruker AVANCE 600
72D 1H-13C HSQC aliphatic1.4 mM D7H_Abeta(1-10), 2.8 mM ZnCl2, 10 mM [U-99% 2D] bis-Tris-d19100% D2O3 mM7.01 atm278Bruker AVANCE 600
82D 1H-1H ROESY1.4 mM D7H_Abeta(1-10), 2.8 mM ZnCl2, 10 mM [U-99% 2D] bis-Tris-d19100% D2O3 mM7.01 atm278Bruker AVANCE 600
92D DQF-COSY1.4 mM D7H_Abeta(1-10), 2.8 mM ZnCl2, 10 mM [U-99% 2D] bis-Tris-d19100% D2O3 mM7.01 atm278Bruker AVANCE 600
102D DOSY1.4 mM D7H_Abeta(1-10), 2.8 mM ZnCl2, 10 mM [U-99% 2D] bis-Tris-d19100% D2O3 mM7.01 atm278Bruker AVANCE 600
122D 1H-15N HMBC0.8 mM D7H_Abeta(1-10), 0.8 mM [U-99% 13C,15N]-(D1,3); [U-99% 15N]-(H6,H7) D7H_Abeta(1-10), 1.7 mM ZnCl2, 10 mM [U-99% 2D] bis-Tris-d19100% D2O3 mM7.01 atm278Bruker AVANCE 600
132D 13C-edited,13C-filtered NOESY0.8 mM D7H_Abeta(1-10), 0.8 mM [U-99% 13C,15N]-(D1,3); [U-99% 15N]-(H6,H7) D7H_Abeta(1-10), 1.7 mM ZnCl2, 10 mM [U-99% 2D] bis-Tris-d19100% D2O3 mM7.01 atm278Bruker AVANCE 600
142D 1H-15N HMBC-NOESY0.8 mM D7H_Abeta(1-10), 0.8 mM [U-99% 13C,15N]-(D1,3); [U-99% 15N]-(H6,H7) D7H_Abeta(1-10), 1.7 mM ZnCl2, 10 mM [U-99% 2D] bis-Tris-d19100% D2O3 mM7.01 atm278Bruker AVANCE 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE600
NMR Refinement
MethodDetailsSoftware
simulated annealingCNS
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number50
Conformers Submitted Total Number20
Representative Model1 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpinBruker Biospin
2processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3data analysisSparkyGoddard
6data analysisAnglesearchPolshakov
4structure calculationCNSBrunger, Adams, Clore, Gros, Nilges and Read
5data analysisPROCHECK / PROCHECK-NMRLaskowski and MacArthur