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Structural basis of Zika and Dengue virus potent antibody cross-neutralization
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4UTA 4UTA, 4UT7 and 4UTB experimental model PDB 4UT7 4UTA, 4UT7 and 4UTB experimental model PDB 4UTB 4UTA, 4UT7 and 4UTB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 3.5M Na Formate
0.1M Tris pH 8.5
Crystal Properties Matthews coefficient Solvent content 4.39 71.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 204.288 α = 90 b = 207.317 β = 90 c = 124.576 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2016-03-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 2 0.98013 SOLEIL PROXIMA 2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.64 40 99.8 0.5 5.1 9.8 77483 52.05
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4UTA, 4UT7 and 4UTB 2.64 40 48051 2436 61.85 0.2242 0.2235 0.2426 0.237 0.2545 RANDOM 56.51
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.6688 0.4914 -4.1601
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 19.38 t_omega_torsion 2.33 t_angle_deg 1 t_bond_d 0.007 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 19.38 t_omega_torsion 2.33 t_angle_deg 1 t_bond_d 0.007 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9496 Nucleic Acid Atoms Solvent Atoms 40 Heterogen Atoms 84
Software Software Software Name Purpose BUSTER refinement XDS data reduction Aimless data scaling