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STRUCTURE OF the RAD14 DNA-binding domain IN COMPLEX WITH N2-acetylaminonaphtyl- GUANINE CONTAINING DNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 277 0.2M Ammonium nitrate
40% (v/v) 2-methyl-1,3,-propanediol
Crystal Properties Matthews coefficient Solvent content 2.44 49.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.041 α = 90 b = 53.041 β = 90 c = 131.345 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2016-05-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.9726 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 49.2 99 0.148 0.99 6.2 4.5 28349
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 99 0.8 1.1 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.9 49.2 26983 1370 99.44 0.23296 0.23113 0.2377 0.26868 0.2724 RANDOM 37.009
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 -0.13 0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.277 r_dihedral_angle_4_deg 25.016 r_dihedral_angle_3_deg 15.237 r_dihedral_angle_1_deg 6.89 r_long_range_B_refined 3.752 r_long_range_B_other 3.716 r_angle_refined_deg 2.184 r_scangle_other 1.619 r_angle_other_deg 1.605 r_mcangle_it 1.395
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.277 r_dihedral_angle_4_deg 25.016 r_dihedral_angle_3_deg 15.237 r_dihedral_angle_1_deg 6.89 r_long_range_B_refined 3.752 r_long_range_B_other 3.716 r_angle_refined_deg 2.184 r_scangle_other 1.619 r_angle_other_deg 1.605 r_mcangle_it 1.395 r_mcangle_other 1.395 r_scbond_it 0.996 r_scbond_other 0.996 r_mcbond_it 0.959 r_mcbond_other 0.958 r_chiral_restr 0.122 r_bond_refined_d 0.018 r_gen_planes_refined 0.015 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1892 Nucleic Acid Atoms 578 Solvent Atoms 112 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data reduction REFMAC phasing