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Refined 3D NMR structure of the cytoplasmic rhodanese domain of the inner membrane protein YgaP from Escherichia coli
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 NOESY 1 mM [U-99% 13C; U-99% 15N] Rhodanese domain 95% H2O/5% D2O 0 mM 7 AMBIENT Pa 303.15 Bruker AVANCE III 700 2 TROSY 1 mM [U-99% 13C; U-99% 15N] Rhodanese domain 95% H2O/5% D2O 0 mM 7 AMBIENT Pa 303.15 Bruker AVANCE III 700 3 3D 1H-15N TOCSY 1 mM [U-99% 13C; U-99% 15N] Rhodanese domain 95% H2O/5% D2O 0 mM 7 AMBIENT Pa 303.15 Bruker AVANCE III 700 4 3D HCCH-TOCSY 1 mM [U-99% 13C; U-99% 15N] Rhodanese domain 95% H2O/5% D2O 0 mM 7 AMBIENT Pa 303.15 Bruker AVANCE III 700 5 3D HNCACB 1 mM [U-99% 13C; U-99% 15N] Rhodanese domain 95% H2O/5% D2O 0 mM 7 AMBIENT Pa 303.15 Bruker AVANCE III 700 6 3D HN(CO)CA 1 mM [U-99% 13C; U-99% 15N] Rhodanese domain 95% H2O/5% D2O 0 mM 7 AMBIENT Pa 303.15 Bruker AVANCE III 700
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 700
NMR Refinement Method Details Software Energy refinement OPAL
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement OPAL 3.97 Luginbuhl, Guntert, Billeter and Wuthrich 2 structure calculation CYANA 3.97 Guntert, Mumenthaler and Wuthrich 3 chemical shift assignment XEASY Bartels et al.