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Room temperature X-ray diffraction of tetragonal HEWL. Third data set (0.93 MGy)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BWH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.7 291 protein: 50 mg/ml of HEWL in mQ
crystallization solution: 200mM NaAcetate pH 4.7 + 10% NaCl
Crystal Properties Matthews coefficient Solvent content 2.32 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.307 α = 90 b = 79.307 β = 90 c = 37.863 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-12-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.984001 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 39.65 100 0.046 0.999 27 6.3 8621 21.315
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 100 0.258 8 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1BWH 2 39.65 8142 447 99.86 0.1363 0.13294 0.1454 0.20047 0.2045 RANDOM 30.037
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.15 -0.15 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.221 r_dihedral_angle_4_deg 20.537 r_dihedral_angle_3_deg 15.046 r_long_range_B_other 9.876 r_long_range_B_refined 9.86 r_scangle_other 7.085 r_dihedral_angle_1_deg 6.304 r_scbond_it 4.603 r_scbond_other 4.599 r_mcangle_other 3.698
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.221 r_dihedral_angle_4_deg 20.537 r_dihedral_angle_3_deg 15.046 r_long_range_B_other 9.876 r_long_range_B_refined 9.86 r_scangle_other 7.085 r_dihedral_angle_1_deg 6.304 r_scbond_it 4.603 r_scbond_other 4.599 r_mcangle_other 3.698 r_mcangle_it 3.679 r_mcbond_it 2.705 r_mcbond_other 2.633 r_angle_refined_deg 1.991 r_angle_other_deg 1.158 r_chiral_restr 0.14 r_bond_refined_d 0.021 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 86 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling