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Room temperature X-ray diffraction of tetragonal HEWL. Second data set (0.62 MGy)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BWH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.7 291 protein: 50 mg/ml of HEWL in mQ
crystallization solution: 200mM NaAcetate pH 4.7 + 10% NaCl
Crystal Properties Matthews coefficient Solvent content 2.32 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.285 α = 90 b = 79.285 β = 90 c = 37.88 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 PIXEL DECTRIS PILATUS 6M 2015-12-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.984001 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 39.64 99.9 0.051 0.999 24.7 6.3 13826 17.583
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 99.6 0.305 6 6.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1BWH 1.7 39.64 13074 713 99.8 0.14554 0.14345 0.1569 0.1849 0.1879 RANDOM 24.244
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.18 -0.18 0.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.831 r_dihedral_angle_4_deg 22.316 r_dihedral_angle_3_deg 13.674 r_long_range_B_refined 8.616 r_long_range_B_other 8.616 r_scangle_other 6.766 r_dihedral_angle_1_deg 6.343 r_scbond_it 4.484 r_scbond_other 4.48 r_mcangle_other 3.357
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.831 r_dihedral_angle_4_deg 22.316 r_dihedral_angle_3_deg 13.674 r_long_range_B_refined 8.616 r_long_range_B_other 8.616 r_scangle_other 6.766 r_dihedral_angle_1_deg 6.343 r_scbond_it 4.484 r_scbond_other 4.48 r_mcangle_other 3.357 r_mcangle_it 3.348 r_mcbond_it 2.356 r_mcbond_other 2.238 r_angle_refined_deg 2.114 r_angle_other_deg 1.215 r_chiral_restr 0.153 r_bond_refined_d 0.024 r_gen_planes_refined 0.013 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 86 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling