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OCEANOBACILLUS IHEYENSIS MACRODOMAIN WITH ADP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SPV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 0.2 M ammonium sulfate, 0.1 M MES pH 6.5, 30% (w/v) PEGMME 5K, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K
Crystal Properties Matthews coefficient Solvent content 2.76 55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.342 α = 90 b = 95.714 β = 115.59 c = 54.734 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M KB mirrors 2013-06-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.9794 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 47.86 91.7 0.067 0.994 9.9 2.2 40508 12.42
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.85 63 0.328 0.739 2.3 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1SPV 1.75 47.86 37246 3203 91.44 0.17247 0.17029 0.1759 0.19833 0.2034 RANDOM 19.392
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -8.08 -0.88 13.35 -5.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.369 r_dihedral_angle_3_deg 12.785 r_dihedral_angle_4_deg 12.112 r_dihedral_angle_1_deg 6.069 r_long_range_B_refined 3.731 r_long_range_B_other 3.608 r_scangle_other 2.215 r_mcangle_it 1.68 r_mcangle_other 1.679 r_angle_refined_deg 1.556
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.369 r_dihedral_angle_3_deg 12.785 r_dihedral_angle_4_deg 12.112 r_dihedral_angle_1_deg 6.069 r_long_range_B_refined 3.731 r_long_range_B_other 3.608 r_scangle_other 2.215 r_mcangle_it 1.68 r_mcangle_other 1.679 r_angle_refined_deg 1.556 r_scbond_it 1.372 r_scbond_other 1.368 r_mcbond_it 1.029 r_mcbond_other 1.028 r_angle_other_deg 0.94 r_chiral_restr 0.078 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2911 Nucleic Acid Atoms Solvent Atoms 186 Heterogen Atoms 64
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing