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crystal structure of human FABP6 in complex with cholate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3ELX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293.15 41% w/v PEG 3350 and 0.1 M Bis-tris pH 5.5
Crystal Properties Matthews coefficient Solvent content 2.08 40.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.86 α = 90 b = 64.72 β = 94.02 c = 59.33 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-08-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.9795 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.39 59.18 99.7 0.077 12 5.5 14115
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.39 2.45 99.9 0.754 2.1 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3elx 2.39 59.18 13374 731 99.67 0.22896 0.22614 0.2278 0.28139 0.2833 RANDOM 52.159
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.28 -1.5 -1.02 1.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.528 r_dihedral_angle_4_deg 13.497 r_dihedral_angle_3_deg 13.423 r_dihedral_angle_1_deg 6.158 r_long_range_B_refined 4.739 r_long_range_B_other 4.739 r_mcangle_it 3.12 r_mcangle_other 3.119 r_scangle_other 2.649 r_mcbond_it 1.751
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.528 r_dihedral_angle_4_deg 13.497 r_dihedral_angle_3_deg 13.423 r_dihedral_angle_1_deg 6.158 r_long_range_B_refined 4.739 r_long_range_B_other 4.739 r_mcangle_it 3.12 r_mcangle_other 3.119 r_scangle_other 2.649 r_mcbond_it 1.751 r_mcbond_other 1.751 r_scbond_it 1.52 r_scbond_other 1.52 r_angle_refined_deg 1.135 r_angle_other_deg 0.809 r_chiral_restr 0.069 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2783 Nucleic Acid Atoms Solvent Atoms 45 Heterogen Atoms 43
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling