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Complex of potato ATG8 protein with a peptide from Irish potato famine pathogen effector protein PexRD54
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.2M-ammonium sulphate, 0.1M Tris buffer, pH 8.0 and 36 % PEG3350
Crystal Properties Matthews coefficient Solvent content 3.9 68.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 172.18 α = 90 b = 172.18 β = 90 c = 172.18 γ = 90
Symmetry Space Group I 41 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2015-02-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 86.09 100 0.13 27.4 32.8 32648
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.95 1.325
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 86.09 32648 1715 99.99 0.17604 0.17476 0.1851 0.19994 0.2021 RANDOM 28.156
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.56 r_dihedral_angle_4_deg 13.368 r_dihedral_angle_3_deg 13.334 r_long_range_B_refined 7.544 r_long_range_B_other 7.543 r_dihedral_angle_1_deg 5.676 r_scangle_other 4.208 r_scbond_it 2.779 r_scbond_other 2.778 r_mcangle_other 2.562
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.56 r_dihedral_angle_4_deg 13.368 r_dihedral_angle_3_deg 13.334 r_long_range_B_refined 7.544 r_long_range_B_other 7.543 r_dihedral_angle_1_deg 5.676 r_scangle_other 4.208 r_scbond_it 2.779 r_scbond_other 2.778 r_mcangle_other 2.562 r_mcangle_it 2.557 r_mcbond_it 1.677 r_mcbond_other 1.662 r_angle_refined_deg 1.5 r_angle_other_deg 0.792 r_chiral_restr 0.085 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1920 Nucleic Acid Atoms Solvent Atoms 234 Heterogen Atoms 47
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling PHASER phasing