5L7V

Crystal Structure of BvGH123 with bond transition state analog Galthiazoline.


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 5L7R 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION2930. 1 M BisTris 16-20 % PEG MME2k
Crystal Properties
Matthews coefficientSolvent content
2.447.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 55.504α = 90
b = 148.386β = 90
c = 147.659γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2016-02-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I020.9795DiamondI02

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.374.1993.40.0630.99915.67.651335
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.32.3763.61.5521.16

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5l7r2.37451273109892.970.1880.18730.2209RANDOM80.9238
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-4.552.162.39
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.808
r_dihedral_angle_4_deg17.992
r_dihedral_angle_3_deg16.924
r_dihedral_angle_1_deg6.858
r_angle_other_deg3.666
r_mcangle_it3.074
r_mcbond_it1.965
r_mcbond_other1.965
r_angle_refined_deg1.626
r_chiral_restr0.094
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.808
r_dihedral_angle_4_deg17.992
r_dihedral_angle_3_deg16.924
r_dihedral_angle_1_deg6.858
r_angle_other_deg3.666
r_mcangle_it3.074
r_mcbond_it1.965
r_mcbond_other1.965
r_angle_refined_deg1.626
r_chiral_restr0.094
r_bond_refined_d0.013
r_gen_planes_other0.012
r_gen_planes_refined0.007
r_bond_other_d
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9077
Nucleic Acid Atoms
Solvent Atoms27
Heterogen Atoms28

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
XDSdata scaling