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Crystal Structure of BvGH123 with bond transition state analog Galthiazoline.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5L7R
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 0. 1 M BisTris
16-20 % PEG MME2k
Crystal Properties Matthews coefficient Solvent content 2.4 47.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.504 α = 90 b = 148.386 β = 90 c = 147.659 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2016-02-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.9795 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 74.19 93.4 0.063 0.999 15.6 7.6 51335
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.37 63.6 1.552 1.1 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5l7r 2.3 74 51273 1098 92.97 0.188 0.1873 0.1893 0.2209 0.2239 RANDOM 80.9238
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.55 2.16 2.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.808 r_dihedral_angle_4_deg 17.992 r_dihedral_angle_3_deg 16.924 r_dihedral_angle_1_deg 6.858 r_angle_other_deg 3.666 r_mcangle_it 3.074 r_mcbond_it 1.965 r_mcbond_other 1.965 r_angle_refined_deg 1.626 r_chiral_restr 0.094
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.808 r_dihedral_angle_4_deg 17.992 r_dihedral_angle_3_deg 16.924 r_dihedral_angle_1_deg 6.858 r_angle_other_deg 3.666 r_mcangle_it 3.074 r_mcbond_it 1.965 r_mcbond_other 1.965 r_angle_refined_deg 1.626 r_chiral_restr 0.094 r_bond_refined_d 0.013 r_gen_planes_other 0.012 r_gen_planes_refined 0.007 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9077 Nucleic Acid Atoms Solvent Atoms 27 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XDS data scaling