X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP52983% w/v PGA-LM, 20% v/v PEG 500 MME, 0.1 M ammonium sulfate, 0.3 M sodium formate, and 0.1 M sodium acetate, pH 5.0
Crystal Properties
Matthews coefficientSolvent content
3.0559.73

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.549α = 90
b = 91.48β = 90
c = 169.938γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCD2014-12-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 21-ID-D1.08APS21-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6142.3199.40.0534.186.8176472
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.611.651000.7480.7832.516.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.6142.31167336875999.370.117790.115670.15796RANDOM23.379
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.22-0.050.27
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free47.888
r_dihedral_angle_2_deg38.577
r_sphericity_bonded21.526
r_dihedral_angle_3_deg12.302
r_dihedral_angle_4_deg10.506
r_rigid_bond_restr7.221
r_long_range_B_refined6.848
r_long_range_B_other6.846
r_scangle_other6.245
r_dihedral_angle_1_deg5.781
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free47.888
r_dihedral_angle_2_deg38.577
r_sphericity_bonded21.526
r_dihedral_angle_3_deg12.302
r_dihedral_angle_4_deg10.506
r_rigid_bond_restr7.221
r_long_range_B_refined6.848
r_long_range_B_other6.846
r_scangle_other6.245
r_dihedral_angle_1_deg5.781
r_scbond_it5.541
r_scbond_other5.541
r_mcangle_it4.213
r_mcangle_other4.213
r_mcbond_it3.747
r_mcbond_other3.729
r_angle_refined_deg1.619
r_angle_other_deg1.01
r_chiral_restr0.121
r_gen_planes_refined0.015
r_bond_refined_d0.014
r_gen_planes_other0.006
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7549
Nucleic Acid Atoms
Solvent Atoms1124
Heterogen Atoms41

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data collection
HKL-2000data scaling
PHASERphasing