5KWZ
NMR Solution Structure of Designed Peptide NC_cHH_D1
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 1.0 mg/mL design peptide NC_cHH_D1 | 90% H2O/10% D2O | 3.0 | ambient | 298 | Bruker AVANCE 600 | |
2 | 2D 1H-1H NOESY | 1.0 mg/mL design peptide NC_cHH_D1 | 90% H2O/10% D2O | 3.0 | ambient | 298 | Bruker AVANCE 600 | |
3 | 2D 1H-1H NOESY | 1.0 mg/mL design peptide NC_cHH_D1 | 100% D2O | 3.0 | ambient | 298 | Bruker AVANCE 600 | |
4 | 2D 1H-15N HSQC | 1.0 mg/mL design peptide NC_cHH_D1 | 90% H2O/10% D2O | 3.0 | ambient | 298 | Bruker AVANCE 600 | |
5 | 2D 1H-13C HSQC | 1.0 mg/mL design peptide NC_cHH_D1 | 100% D2O | 3.0 | ambient | 298 | Bruker AVANCE 600 | |
6 | 2D ECOSY | 1.0 mg/mL design peptide NC_cHH_D1 | 100% D2O | 3.0 | ambient | 298 | Bruker AVANCE 600 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | CNS |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | TopSpin | 2.1 | Bruker Biospin |
2 | chemical shift assignment | CcpNMR | CCPN | |
3 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
4 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read |