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Joint X-ray Neutron Structure of Cholesterol Oxidase
X-RAY DIFFRACTION - NEUTRON DIFFRACTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 7% PEG 8000, 100mM MnSO4, 100mM cacodylic acid pH 5.2
Crystal Properties Matthews coefficient Solvent content 2.12 42.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.605 α = 90 b = 74.084 β = 105.21 c = 63.828 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 neutron 293 IMAGE PLATE MAATEL IMAGINE 2013-06-01 L LAUE 2 1 x-ray 293 IMAGE PLATE RIGAKU RAXIS IV++ Osmic Varimax 2013-07-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 NUCLEAR REACTOR ORNL High Flux Isotope Reactor BEAMLINE CG4D 2.8-4.3 ORNL High Flux Isotope Reactor CG4D 2 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) R Split (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.192 61.593 76.7 0.258 0.258 4 4 17714 12.4 2 1.499 40 91.03 21.1 3.6 67641 12.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) R Split (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 0.349 1.9 3.3 1 2.32 2.46 0.335 2.1 3.2 1 2.46 2.63 0.329 2.1 3.3 1 2.63 2.84 0.308 2.2 3.4 1 2.84 3.11 0.28 2.4 3.7 1 3.11 3.48 0.258 2.6 4.2 1 3.48 4.02 0.257 2.5 4.9 1 4.02 4.92 0.243 2.6 5.4 1 4.92 6.96 0.195 3.2 5.1 1 6.96 61.199 0.13 4.5 3.6
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 1.499 25.264 1.37 67641 3376 91.03 0.1918 0.1904 0.1384 0.2195 0.1642 13.2196 NEUTRON DIFFRACTION MOLECULAR REPLACEMENT 2.214 61.593 17713 886 76.21 0.2849 0.2835 0.3117
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 23.11 f_angle_d 1.459 f_chiral_restr 0.134 f_plane_restr 0.036 f_bond_d 0.016
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3834 Nucleic Acid Atoms Solvent Atoms 435 Heterogen Atoms 88
Software Software Software Name Purpose PHENIX refinement PDB_EXTRACT data extraction HKL-3000 data reduction SCALA data scaling PHASER phasing