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The structure of Arabidopsis thaliana FUT1 in complex with XXLG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 7 mg/mL protein in 0.1 M MES pH 6.0 to 7.0 and 16% to 23% w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.38 48.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.748 α = 90 b = 80.15 β = 91.91 c = 157.616 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Bruker Platinum 135 Helios mirrors 2014-10-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR 1.54188
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 50 99.8 0.0948 11.61 7.75 191803
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.79 1.89 98.8 0.7225 1.48 5.32
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.79 157.53 182014 9305 99.53 0.16811 0.16564 0.174 0.21676 0.2227 RANDOM 24.592
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.97 -0.57 0.47 0.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.89 r_dihedral_angle_4_deg 19.966 r_dihedral_angle_3_deg 15.418 r_dihedral_angle_1_deg 7.021 r_long_range_B_refined 6.731 r_long_range_B_other 6.545 r_scangle_other 3.129 r_mcangle_it 2.55 r_mcangle_other 2.55 r_angle_refined_deg 2.085
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.89 r_dihedral_angle_4_deg 19.966 r_dihedral_angle_3_deg 15.418 r_dihedral_angle_1_deg 7.021 r_long_range_B_refined 6.731 r_long_range_B_other 6.545 r_scangle_other 3.129 r_mcangle_it 2.55 r_mcangle_other 2.55 r_angle_refined_deg 2.085 r_scbond_it 1.969 r_scbond_other 1.969 r_mcbond_it 1.524 r_mcbond_other 1.523 r_angle_other_deg 1.089 r_chiral_restr 0.149 r_bond_refined_d 0.024 r_gen_planes_refined 0.015 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14440 Nucleic Acid Atoms Solvent Atoms 2077 Heterogen Atoms 194
Software Software Software Name Purpose REFMAC refinement PROTEUM PLUS data collection MOLREP phasing