☰ Navigation Tabs
Crystal structure of human beta-defensin 4 (HBD4)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 293 25.5% PEG 8,000, 0.085 M sodium acetate buffer pH 4.5, 0.17 M Lithium Sulfate, 15% Glycerol
Crystal Properties Matthews coefficient Solvent content 2.19 43.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.704 α = 90 b = 41.704 β = 90 c = 52.945 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2010-10-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0000 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 50 95.6 0.059 0.06 0.014 16.7 16.6 6994
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.58 8 0.865 7.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.6 15 5916 645 100 0.2336 0.23 0.2326 0.2678 0.2666 RANDOM 51.173
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.49 -0.49 0.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.161 r_dihedral_angle_4_deg 20.028 r_dihedral_angle_3_deg 18.258 r_scangle_it 8.514 r_dihedral_angle_1_deg 7.294 r_scbond_it 5.452 r_mcangle_it 4.964 r_rigid_bond_restr 2.926 r_mcbond_it 2.88 r_angle_refined_deg 2.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.161 r_dihedral_angle_4_deg 20.028 r_dihedral_angle_3_deg 18.258 r_scangle_it 8.514 r_dihedral_angle_1_deg 7.294 r_scbond_it 5.452 r_mcangle_it 4.964 r_rigid_bond_restr 2.926 r_mcbond_it 2.88 r_angle_refined_deg 2.05 r_chiral_restr 0.129 r_bond_refined_d 0.02 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 363 Nucleic Acid Atoms Solvent Atoms 17 Heterogen Atoms 21
Software Software Software Name Purpose HKL-2000 data collection HKL-2000 data scaling SHELX phasing REFMAC refinement PDB_EXTRACT data extraction