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NMR structure of human antimicrobial peptide KAMP-19
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D NOESY 3.4 mM KAMP-19 90% H2O/10% D2O nd 5.4 1 atm 298 Varian INOVA 600 2 2D DQF-COSY 3.4 mM KAMP-19 90% H2O/10% D2O nd 5.4 1 atm 298 Varian INOVA 600 3 2D 1H-1H TOCSY 3.4 mM KAMP-19 90% H2O/10% D2O nd 5.4 1 atm 298 Varian INOVA 600 4 2D 1H-15N HSQC 3.4 mM KAMP-19 90% H2O/10% D2O nd 5.4 1 atm 298 Varian INOVA 600 5 2D 1H-13C HSQC 3.4 mM KAMP-19 90% H2O/10% D2O nd 5.4 1 atm 298 Varian INOVA 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 600
NMR Refinement Method Details Software simulated annealing High and low temperature PIPP
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure calculation XPLOR-NIH 1 G. Marius Clore (NIH) 2 chemical shift assignment PIPP Garrett 3 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 5 peak picking PIPP Garrett 4 refinement PIPP Garrett