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Solution structure of the yeast Ddi1 HDD domain
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N het NOE 0.5 mM [U-15N] Ddi1 86-196 90% H2O/10% D2O 110 mM 6.5 1 atm 303 Bruker AVANCE 600 2 2D 1H-15N HSQC-IPAP 0.5 mM [U-15N] Ddi1 86-196 90% H2O/10% D2O 110 mM 6.5 1 atm 303 Bruker AVANCE 600 3 2D 1H-15N HSQC-IPAP 0.5 mM [U-15N] Ddi1 86-196 90% H2O/10% D2O 110 mM 6.5 1 atm 303 Bruker AVANCE 600 4 3D CBCA(CO)NH 0.5 mM [U-13C; U-15N] Ddi1 86-196 90% H2O/10% D2O 110 mM 6.5 1 atm 303 Bruker AVANCE 600 5 3D HNCACB 0.5 mM [U-13C; U-15N] Ddi1 86-196 90% H2O/10% D2O 110 mM 6.5 1 atm 303 Bruker AVANCE 600 6 3D 15N/1H NOESY-HSQC 0.5 mM [U-13C; U-15N] Ddi1 86-196 90% H2O/10% D2O 110 mM 6.5 1 atm 303 Bruker AVANCE 850 7 3D 13C/1H HSQC-NOESY 0.5 mM [U-13C; U-15N] Ddi1 86-196 90% H2O/10% D2O 110 mM 6.5 1 atm 303 Bruker AVANCE 850 8 2D 1H-15N HSQC 0.5 mM [U-15N] Ddi1 86-196 90% H2O/10% D2O 110 mM 6.5 1 atm 303 Bruker AVANCE 600 9 2D 1H-15N HSQC 0.5 mM [U-13C; U-15N] Ddi1 86-196 90% H2O/10% D2O 110 mM 6.5 1 atm 303 Bruker AVANCE 850
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Bruker AVANCE 850
NMR Refinement Method Details Software simulated annealing XPLOR-NIH
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 structure calculation XPLOR-NIH 2.40 C.D. Schwieters, J.J. Kuszewski,
N. Tjandra, and G.M. Clore 6 refinement XPLOR-NIH 2.40 C.D. Schwieters, J.J. Kuszewski,
N. Tjandra, and G.M. Clore 2 chemical shift assignment Sparky Goddard 3 data analysis TALOS Cornilescu, Delaglio and Bax 4 chemical shift assignment CYANA Guntert, Mumenthaler and Wuthrich 5 data analysis Module M. Blackledge