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Aza-glycine containing collagen peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3WN8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.6 277 0.094 M Tris-HCl (pH 7.6), 30% (w/v) PEG 4000, 0.01 M Li2SO4 monohydrate
Crystal Properties Matthews coefficient Solvent content 1.8 31.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 27.49 α = 90 b = 18.24 β = 91.66 c = 48.84 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Cryogenically-cooled single crystal Si(220) side bounce monochromator. Optional Si(311) to achive 13.474 keV. 2016-02-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.97918 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.127 27.48 99.3 0.088 0.995 7.1 2.8 18676 5.65
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.127 1.15 97.7 0.566 1.6 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3WN8 1.127 27.478 1.39 18538 1853 98.99 0.1319 0.1288 0.1291 0.159 0.1595
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 19.432 f_angle_d 1.688 f_chiral_restr 0.094 f_bond_d 0.015 f_plane_restr 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 468 Nucleic Acid Atoms Solvent Atoms 133 Heterogen Atoms 5
Software Software Software Name Purpose PHENIX refinement iMOSFLM data reduction SCALA data scaling PHENIX phasing