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Wolinella succinogenes L-asparaginase P121 + L-Glutamic acid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WSA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 283 PEG MME 2000 + 0.1M HEPES pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.34 47.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 145.806 α = 90 b = 70.961 β = 118.08 c = 142.276 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2015-06-30 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.97872 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.62 30 96.1 0.081 0.996 9.09 3.71 155380 -3 30.67
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.62 1.72 82.5 0.661 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1WSA 1.63 30 143683 7400 95.24 0.1643 0.1626 0.1735 0.1975 0.2068 RANDOM 27.651
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.71 0.61 -0.03 -0.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.363 r_dihedral_angle_4_deg 19.728 r_dihedral_angle_3_deg 14.351 r_dihedral_angle_1_deg 6.302 r_mcangle_it 3.032 r_mcbond_it 2.312 r_mcbond_other 2.312 r_angle_refined_deg 1.748 r_angle_other_deg 1.517 r_chiral_restr 0.111
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.363 r_dihedral_angle_4_deg 19.728 r_dihedral_angle_3_deg 14.351 r_dihedral_angle_1_deg 6.302 r_mcangle_it 3.032 r_mcbond_it 2.312 r_mcbond_other 2.312 r_angle_refined_deg 1.748 r_angle_other_deg 1.517 r_chiral_restr 0.111 r_bond_refined_d 0.018 r_gen_planes_refined 0.011 r_bond_other_d 0.009 r_gen_planes_other 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9736 Nucleic Acid Atoms Solvent Atoms 1485 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement XDS data reduction MOLREP phasing XDS data scaling