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Wolinella succinogenes L-asparaginase P121 and L-Aspartic acid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WSA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 283 PEG2000, HEPES 7.5
Crystal Properties Matthews coefficient Solvent content 2.33 47.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 144.755 α = 90 b = 71.459 β = 118.07 c = 141.502 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2015-06-30 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.97872 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.696 30 98.8 0.065 16.37 3.74 139440 21.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.696 1.8 97.2 0.718 22086
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1wsa 1.696 30 139440 6531 98.8 0.1768 0.1754 0.1848 0.2067 0.214 RANDOM 26.87
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.37 0.31 0.73 -0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.53 r_dihedral_angle_4_deg 21.026 r_dihedral_angle_3_deg 14.599 r_dihedral_angle_1_deg 6.007 r_mcangle_it 3.258 r_mcbond_it 2.424 r_mcbond_other 2.424 r_angle_refined_deg 1.776 r_angle_other_deg 1.442 r_chiral_restr 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.53 r_dihedral_angle_4_deg 21.026 r_dihedral_angle_3_deg 14.599 r_dihedral_angle_1_deg 6.007 r_mcangle_it 3.258 r_mcbond_it 2.424 r_mcbond_other 2.424 r_angle_refined_deg 1.776 r_angle_other_deg 1.442 r_chiral_restr 0.11 r_bond_refined_d 0.019 r_gen_planes_refined 0.012 r_bond_other_d 0.009 r_gen_planes_other 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9736 Nucleic Acid Atoms Solvent Atoms 911 Heterogen Atoms 36
Software Software Software Name Purpose XDS data reduction REFMAC refinement MOLREP phasing XDS data scaling