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THE TYPE II COHESIN DOCKERIN COMPLEX FROM CLOSTRIDIUM THERMOCELLUM
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2MB3 PDB ENTRIES 2MB3 AND 2B59 experimental model PDB 2B59 PDB ENTRIES 2MB3 AND 2B59
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 12% (m/v) polyethyleneglycol (PEG) 3350, 4% tacsimate, pH 5.0
Crystal Properties Matthews coefficient Solvent content 2.2 43.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.67 α = 90 b = 78.63 β = 95.87 c = 35.8 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2008-02-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9735 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.98 39.31 97.8 0.09 13.1 3.6 21909 4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.98 2.09 98.2 0.17 5.5 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRIES 2MB3 AND 2B59 1.98 18.83 19669 2221 97.54 0.19331 0.18702 0.24739 0.2843 RANDOM 20.01
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.02 -0.02 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.392 r_dihedral_angle_4_deg 12.412 r_dihedral_angle_3_deg 12.321 r_dihedral_angle_1_deg 6.192 r_scangle_it 2.062 r_scbond_it 1.345 r_angle_refined_deg 1.154 r_mcangle_it 0.787 r_mcbond_it 0.495 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.392 r_dihedral_angle_4_deg 12.412 r_dihedral_angle_3_deg 12.321 r_dihedral_angle_1_deg 6.192 r_scangle_it 2.062 r_scbond_it 1.345 r_angle_refined_deg 1.154 r_mcangle_it 0.787 r_mcbond_it 0.495 r_nbtor_refined 0.305 r_nbd_refined 0.196 r_symmetry_vdw_refined 0.169 r_symmetry_hbond_refined 0.137 r_xyhbond_nbd_refined 0.125 r_chiral_restr 0.075 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2453 Nucleic Acid Atoms Solvent Atoms 322 Heterogen Atoms 2
Software Software Software Name Purpose PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling