☰ Navigation Tabs
Lysozyme with nano particles
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 0.1M Tris-HCl pH8.5, 1.3M Ammonium Tartrate Dibasic
Crystal Properties Matthews coefficient Solvent content 1.98 37.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.355 α = 90 b = 77.355 β = 90 c = 37.97 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2016-04-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 1.0 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 20 99.1 0.079 0.083 0.024 9.2 11 46637
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.12 89.1 0.816 0.855 0.25 0.848 9.8 2069
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.1 19.339 44285 2290 98.96 0.1541 0.1528 0.1534 0.1803 0.1803 RANDOM 16.847
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.09 0.09 -0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.8 r_sphericity_free 27.908 r_dihedral_angle_4_deg 18.055 r_sphericity_bonded 13.897 r_dihedral_angle_3_deg 13.535 r_dihedral_angle_1_deg 5.905 r_rigid_bond_restr 3.443 r_angle_refined_deg 1.853 r_mcangle_it 1.829 r_mcbond_it 1.356
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.8 r_sphericity_free 27.908 r_dihedral_angle_4_deg 18.055 r_sphericity_bonded 13.897 r_dihedral_angle_3_deg 13.535 r_dihedral_angle_1_deg 5.905 r_rigid_bond_restr 3.443 r_angle_refined_deg 1.853 r_mcangle_it 1.829 r_mcbond_it 1.356 r_mcbond_other 1.356 r_angle_other_deg 1.165 r_chiral_restr 0.133 r_bond_refined_d 0.018 r_gen_planes_refined 0.012 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 141 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling MOLREP phasing PDB_EXTRACT data extraction HKL-2000 data reduction