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Crystal structure of the UAF1/USP12 complex in F222 space group
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.8 277 0.1 M imidazole, 18% PEG 2000MME, 0.3 M ammonium citrate
Crystal Properties Matthews coefficient Solvent content 2.37 48.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.958 α = 90 b = 158.929 β = 90 c = 234.584 γ = 90
Symmetry Space Group F 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2012-11-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 1.283 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.3 50.01 98.1 0.102 0.109 28.2 8.4 16052
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.3 3.36 96.4 6.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 3.3 50.01 16052 814 97.95 0.23737 0.23498 0.237 0.28551 0.2709 RANDOM 128.676
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -7.03 2.08 4.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.02 r_dihedral_angle_4_deg 16.388 r_dihedral_angle_3_deg 16.379 r_long_range_B_other 14.727 r_long_range_B_refined 14.726 r_scangle_other 11.737 r_mcangle_it 11.733 r_mcangle_other 11.732 r_mcbond_it 7.896 r_mcbond_other 7.896
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.02 r_dihedral_angle_4_deg 16.388 r_dihedral_angle_3_deg 16.379 r_long_range_B_other 14.727 r_long_range_B_refined 14.726 r_scangle_other 11.737 r_mcangle_it 11.733 r_mcangle_other 11.732 r_mcbond_it 7.896 r_mcbond_other 7.896 r_scbond_other 7.829 r_scbond_it 7.828 r_dihedral_angle_1_deg 7.524 r_angle_other_deg 3.903 r_angle_refined_deg 1.547 r_chiral_restr 0.104 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_gen_planes_other 0.005 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6365 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement Coot model building PHENIX phasing HKL-2000 data reduction HKL-2000 data scaling