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Crystal structure of CREN7-DSDNA (GTGATCGC) complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3LWH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 294 PEG1500
Crystal Properties Matthews coefficient Solvent content 3.4 63.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.694 α = 90 b = 77.676 β = 90 c = 104.268 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-11-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.97947 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 99.9 3.82 8.1 18763
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3LWH 2.1 38 17794 944 99.78 0.19636 0.196 0.1995 0.21 0.211 RANDOM 44.666
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.98 2.06 -4.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.655 r_dihedral_angle_3_deg 14.921 r_dihedral_angle_4_deg 6.651 r_long_range_B_refined 5.704 r_dihedral_angle_1_deg 5.681 r_long_range_B_other 5.651 r_mcangle_other 4.353 r_mcangle_it 4.35 r_scangle_other 4.229 r_angle_other_deg 3.941
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.655 r_dihedral_angle_3_deg 14.921 r_dihedral_angle_4_deg 6.651 r_long_range_B_refined 5.704 r_dihedral_angle_1_deg 5.681 r_long_range_B_other 5.651 r_mcangle_other 4.353 r_mcangle_it 4.35 r_scangle_other 4.229 r_angle_other_deg 3.941 r_scbond_other 3.165 r_scbond_it 3.164 r_mcbond_it 3.078 r_mcbond_other 3.065 r_angle_refined_deg 1.212 r_chiral_restr 0.049 r_bond_refined_d 0.009 r_gen_planes_refined 0.009 r_gen_planes_other 0.005 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 926 Nucleic Acid Atoms 648 Solvent Atoms 126 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing