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Wild type D4 in orthorhombic space group
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4DOF 4DOF_A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 5% PEG3000, 0.1M NaCl, 0.1M Hepes
Crystal Properties Matthews coefficient Solvent content 2.73 55.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 117.769 α = 90 b = 134.065 β = 90 c = 139.101 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH Mirrors 2005-02-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-BM 0.9762 APS 22-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 32.24 100 0.06 10.4 7.48 98092 1 28.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 100 0.253 2.1 7.48
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4DOF_A 2.3 32.24 93226 4905 99.91 0.21688 0.2152 0.2184 0.24853 0.2516 RANDOM 33.778
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 -0.01 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.266 r_dihedral_angle_4_deg 15.314 r_dihedral_angle_3_deg 13.106 r_dihedral_angle_1_deg 6.125 r_long_range_B_refined 3.971 r_long_range_B_other 3.805 r_mcangle_it 2.016 r_mcangle_other 2.016 r_scangle_other 1.765 r_angle_refined_deg 1.223
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.266 r_dihedral_angle_4_deg 15.314 r_dihedral_angle_3_deg 13.106 r_dihedral_angle_1_deg 6.125 r_long_range_B_refined 3.971 r_long_range_B_other 3.805 r_mcangle_it 2.016 r_mcangle_other 2.016 r_scangle_other 1.765 r_angle_refined_deg 1.223 r_mcbond_it 1.138 r_mcbond_other 1.138 r_scbond_it 0.98 r_scbond_other 0.98 r_angle_other_deg 0.942 r_chiral_restr 0.071 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14100 Nucleic Acid Atoms Solvent Atoms 800 Heterogen Atoms 94
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling PHASER phasing