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Temperature sensitive D4 mutant L110F
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4DOF 4DOF_A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 277 8% PEG8000, 5% Glycerol, 0.1M Tris
Crystal Properties Matthews coefficient Solvent content 2.59 52.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.346 α = 90 b = 102.916 β = 90 c = 116.587 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ Ni/Yale Mirrors 2009-09-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 47.08 99.9 0.054 0.998 14.8 5.4 44146 44.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 100 0.658 1.3 5.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4DOF_A 2.4 47.08 41858 2223 99.86 0.22901 0.22771 0.2315 0.25332 0.2562 RANDOM 50.105
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.984 r_dihedral_angle_4_deg 14.617 r_dihedral_angle_3_deg 14.153 r_long_range_B_refined 8.391 r_long_range_B_other 8.391 r_dihedral_angle_1_deg 6.28 r_scangle_other 5.721 r_mcangle_it 5.153 r_mcangle_other 5.153 r_scbond_it 3.572
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.984 r_dihedral_angle_4_deg 14.617 r_dihedral_angle_3_deg 14.153 r_long_range_B_refined 8.391 r_long_range_B_other 8.391 r_dihedral_angle_1_deg 6.28 r_scangle_other 5.721 r_mcangle_it 5.153 r_mcangle_other 5.153 r_scbond_it 3.572 r_scbond_other 3.571 r_mcbond_it 3.294 r_mcbond_other 3.294 r_angle_refined_deg 1.476 r_angle_other_deg 1.341 r_chiral_restr 0.088 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.006 r_gen_planes_other 0.006 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7004 Nucleic Acid Atoms Solvent Atoms 175 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing