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DNA BINDING DOMAIN OF E.COLI CADC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 10 MM MES PH 6.5, 10 MM ZINC SULFATE,
27.5% PEG550 MME, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K
Crystal Properties Matthews coefficient Solvent content 2.74 55.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.14 α = 90 b = 104.14 β = 90 c = 44 γ = 120
Symmetry Space Group P 64 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-07-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.99987 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 90 99.6 0.038 35.76 14.6 9222 48.88
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.1 99.9 0.593 4.09
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.05 90 8762 460 99.6 0.185 0.182 0.2201 0.223 0.2406 RANDOM 90.67
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.7 0.35 0.7 -2.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.937 r_dihedral_angle_4_deg 25.563 r_dihedral_angle_3_deg 19.248 r_long_range_B_other 9.168 r_long_range_B_refined 9.165 r_dihedral_angle_1_deg 7.832 r_scangle_other 7.602 r_mcangle_it 5.663 r_mcangle_other 5.661 r_scbond_it 5.464
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.937 r_dihedral_angle_4_deg 25.563 r_dihedral_angle_3_deg 19.248 r_long_range_B_other 9.168 r_long_range_B_refined 9.165 r_dihedral_angle_1_deg 7.832 r_scangle_other 7.602 r_mcangle_it 5.663 r_mcangle_other 5.661 r_scbond_it 5.464 r_scbond_other 5.444 r_mcbond_other 4.46 r_mcbond_it 4.459 r_angle_refined_deg 2.169 r_angle_other_deg 0.971 r_chiral_restr 0.121 r_bond_refined_d 0.02 r_gen_planes_refined 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 870 Nucleic Acid Atoms Solvent Atoms 28 Heterogen Atoms 5
Software Software Software Name Purpose XDS data reduction SCALA data scaling Auto-Rickshaw phasing REFMAC refinement Auto-Rickshaw phasing Auto-Rickshaw phasing Auto-Rickshaw phasing Auto-Rickshaw phasing