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Crystal structure of the human Tankyrase 2 (TNKS2) SAM domain (DH902/924RE)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2E8O 1v85_A, 3bs5_B, 3bq_7, 2e8o_A, 2gle_A experimental model PDB 3BS5 1v85_A, 3bs5_B, 3bq_7, 2e8o_A, 2gle_A experimental model PDB 1V85 1v85_A, 3bs5_B, 3bq_7, 2e8o_A, 2gle_A experimental model PDB 2GLE 1v85_A, 3bs5_B, 3bq_7, 2e8o_A, 2gle_A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 285.15 PEG 3350 20%
0.1 MTris-HCl pH 8.5
0.2 M Ammonium Acetate
Crystal Properties Matthews coefficient Solvent content 2.86 57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.63 α = 90 b = 56.63 β = 90 c = 46.1 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-10-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9763 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.53 49.05 100 0.058 17 17 12770 40.23
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.53 1.58 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1v85_A, 3bs5_B, 3bq_7, 2e8o_A, 2gle_A 1.53 28.32 12770 636 100 0.203 0.201 0.2022 0.235 0.2372 RANDOM 46.71
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.9682 0.9682 -1.9365
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 15.81 t_omega_torsion 2.91 t_angle_deg 0.94 t_bond_d 0.01 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 15.81 t_omega_torsion 2.91 t_angle_deg 0.94 t_bond_d 0.01 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 510 Nucleic Acid Atoms Solvent Atoms 40 Heterogen Atoms
Software Software Software Name Purpose BUSTER refinement xia2 data reduction Aimless data scaling PHASER phasing