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Bacteroides ovatus Xyloglucan PUL GH43A in complex with AraLOG
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other GH43B to be deposited
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.2 292 0.1 M Tris pH 7.2 - 7.8, 0.18 M magnesium chloride and 12% (w/v) PEG-6000
Crystal Properties Matthews coefficient Solvent content 2.3 46.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.591 α = 90 b = 91.505 β = 90 c = 154.155 γ = 90
Symmetry Space Group P 21 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-10-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9795 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 46.49 99.8 0.17 0.994 8.6 7.9 84685
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.93 99.6 1.44 1.6 7.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT GH43B to be deposited 1.9 46.49 80337 4271 99.58 0.18073 0.17877 0.21796 0.2036 RANDOM 23.966
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.16 0.33 -0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.768 r_dihedral_angle_4_deg 16.147 r_dihedral_angle_3_deg 11.735 r_dihedral_angle_1_deg 6.89 r_long_range_B_refined 4.937 r_long_range_B_other 4.937 r_scangle_other 2.106 r_mcangle_it 1.892 r_mcangle_other 1.892 r_angle_refined_deg 1.382
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.768 r_dihedral_angle_4_deg 16.147 r_dihedral_angle_3_deg 11.735 r_dihedral_angle_1_deg 6.89 r_long_range_B_refined 4.937 r_long_range_B_other 4.937 r_scangle_other 2.106 r_mcangle_it 1.892 r_mcangle_other 1.892 r_angle_refined_deg 1.382 r_scbond_it 1.295 r_scbond_other 1.295 r_mcbond_it 1.168 r_mcbond_other 1.168 r_angle_other_deg 0.922 r_chiral_restr 0.084 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7837 Nucleic Acid Atoms Solvent Atoms 996 Heterogen Atoms 42
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing