X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1F1G 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1MICROBATCH29525% PEG 3350, 0.1 M Citric Acid, NaOH pH 3.5
Crystal Properties
Matthews coefficientSolvent content
3.4964.74

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 207.208α = 90
b = 207.208β = 90
c = 45.635γ = 120
Symmetry
Space GroupP 63

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2015-12-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPAL/PLS BEAMLINE 5C (4A)0.97950PAL/PLS5C (4A)

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.755096.529.85.3109761
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.751.78

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1F1G1.7550104247551496.510.177990.176790.20015RANDOM27.604
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.450.230.45-1.46
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.813
r_dihedral_angle_4_deg18.641
r_dihedral_angle_3_deg14.685
r_long_range_B_other7.344
r_long_range_B_refined7.331
r_dihedral_angle_1_deg6.839
r_scangle_other6.195
r_scbond_it4.137
r_scbond_other4.116
r_mcangle_it3.418
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.813
r_dihedral_angle_4_deg18.641
r_dihedral_angle_3_deg14.685
r_long_range_B_other7.344
r_long_range_B_refined7.331
r_dihedral_angle_1_deg6.839
r_scangle_other6.195
r_scbond_it4.137
r_scbond_other4.116
r_mcangle_it3.418
r_mcangle_other3.417
r_mcbond_other2.571
r_mcbond_it2.57
r_angle_refined_deg2.118
r_angle_other_deg0.984
r_chiral_restr0.145
r_bond_refined_d0.023
r_gen_planes_refined0.012
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5469
Nucleic Acid Atoms
Solvent Atoms269
Heterogen Atoms52

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data processing
HKL-2000data scaling