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Crystal structure of the BD1-NTPR complex from BEND3 and PICH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1 mM HEPES, pH=7.0
1.56 M ammonium sulphate
Crystal Properties Matthews coefficient Solvent content 3.87 68.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.28 α = 90 b = 47.28 β = 90 c = 431.579 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2015-10-20 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 71.93 99.1 8.7 20 14907
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.2 71.93 14907 786 98.09 0.22236 0.22151 0.2283 0.23748 0.2424 RANDOM 58.618
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.43 -0.71 -1.43 4.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.394 r_dihedral_angle_3_deg 15.528 r_dihedral_angle_4_deg 15.303 r_long_range_B_refined 8.804 r_long_range_B_other 8.803 r_dihedral_angle_1_deg 7.672 r_scangle_other 6.546 r_mcangle_it 5.066 r_mcangle_other 5.064 r_scbond_it 4.161
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.394 r_dihedral_angle_3_deg 15.528 r_dihedral_angle_4_deg 15.303 r_long_range_B_refined 8.804 r_long_range_B_other 8.803 r_dihedral_angle_1_deg 7.672 r_scangle_other 6.546 r_mcangle_it 5.066 r_mcangle_other 5.064 r_scbond_it 4.161 r_scbond_other 4.145 r_mcbond_it 3.411 r_mcbond_other 3.41 r_angle_refined_deg 1.587 r_angle_other_deg 0.986 r_chiral_restr 0.095 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1259 Nucleic Acid Atoms Solvent Atoms 18 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling SHELXDE phasing