Find PDB structures and Computed Structure Models (CSM) by combining queries from tools in this suite: Attribute Search, Sequence Similarity, Sequence Motif, 3D Similarity, and 3D Motif with 'AND' logic.
Structure of the S. cerevisiae alpha-mannosidase 1
ELECTRON MICROSCOPY
Sample
Alpha-mannosidase 1
Specimen Preparation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK III
Cryogen Name
ETHANE
Sample Vitrification Details
2.5 ul of sample was applied, offset -3, 9s blotting time
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
33588
Reported Resolution (Å)
6.3
Resolution Method
FSC 0.143 CUT-OFF
Other Details
1. From 85274 initially auto-picked particles, 16678 were eliminated after 2D classification.
2. From 68596, two classes making up 33588 particles wer ...
1. From 85274 initially auto-picked particles, 16678 were eliminated after 2D classification.
2. From 68596, two classes making up 33588 particles were included in the final reconstruction.
Refinement Type
Symmetry Type
POINT
Point Symmetry
D2
Map-Model Fitting and Refinement
Id
1
Refinement Space
REAL
Refinement Protocol
FLEXIBLE FIT
Refinement Target
Cross-correlation coefficient
Overall B Value
80
Fitting Procedure
Details
1. Fitting of a homology model based on PDB 2wyh combined with a homology model based on PDB 2xbz and 3cmg for the C- (residues 287-1083) and N-termin ...
1. Fitting of a homology model based on PDB 2wyh combined with a homology model based on PDB 2xbz and 3cmg for the C- (residues 287-1083) and N-terminal part (residues 45-203) respectively
2. ab initio modelling for a three-helix bundle of the N-terminal part (residues 209-286)
3. creating an ideal poly-alanine helix for residues 17-27