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Crystal structure of XerH site-specific recombinase bound to palindromic difH substrate: post-cleavage complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 279.15 0.1 M HEPES
0.2M magnesium chloride
37% PEG 400 2 VAPOR DIFFUSION 6.3 279.15 0.1 M HEPES
0.2M magnesium chloride
39% PEG 400
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.38 α = 90 b = 115.22 β = 90 c = 235.2 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2014-04-12 M SINGLE WAVELENGTH 2 2 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2014-04-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.97908 ESRF ID29 2 SYNCHROTRON ESRF BEAMLINE ID29 0.97908 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 46.963 99.86 0.097 0.999 14.9 8.1 46216
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 99.5 1.51 8.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 2.4 46.963 1.33 46216 2310 99.86 0.1962 0.1949 0.2042 0.2203 0.2273
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 17.987 f_angle_d 0.545 f_chiral_restr 0.021 f_bond_d 0.002 f_plane_restr 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5574 Nucleic Acid Atoms 1202 Solvent Atoms 153 Heterogen Atoms 55
Software Software Software Name Purpose PHENIX refinement XDS data reduction XDS data scaling autoSHARP phasing PHENIX model building