5JGA

Crystal structure of human TAK1/TAB1 fusion protein in complex with ligand 11c


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2EVA 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.72941.7M sodium potassium phosphate, 20%(v/v) Glycerol as cryoprotectant
Crystal Properties
Matthews coefficientSolvent content
3.8668.14

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 58.009α = 90
b = 133.796β = 90
c = 141.374γ = 90
Symmetry
Space GroupI 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray95CCDADSC QUANTUM 210r2009-03-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPHOTON FACTORY BEAMLINE AR-NW12A1.0000Photon FactoryAR-NW12A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1297.1897.80.06711.67.136658
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.0787.90.5425.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2EVA297.1834824182297.820.19650.19520.2213RANDOM40.658
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.687
r_dihedral_angle_4_deg21.223
r_dihedral_angle_3_deg12.98
r_dihedral_angle_1_deg5.841
r_mcangle_it3.875
r_scbond_it2.639
r_mcbond_it2.291
r_angle_refined_deg1.353
r_chiral_restr0.086
r_bond_refined_d0.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.687
r_dihedral_angle_4_deg21.223
r_dihedral_angle_3_deg12.98
r_dihedral_angle_1_deg5.841
r_mcangle_it3.875
r_scbond_it2.639
r_mcbond_it2.291
r_angle_refined_deg1.353
r_chiral_restr0.086
r_bond_refined_d0.01
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2314
Nucleic Acid Atoms
Solvent Atoms186
Heterogen Atoms34

Software

Software
Software NamePurpose
HKL-2000data processing
HKL-2000data scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction