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Ten minutes iron loaded Rana Catesbeiana H' ferritin variant E57A/E136A/D140A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5J8S
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 281 1.6-2.0 M MgCl2 and 0.1 M bicine pH 9.0
Crystal Properties Matthews coefficient Solvent content 3.26 62.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 183.744 α = 90 b = 183.744 β = 90 c = 183.744 γ = 90
Symmetry Space Group F 4 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2014-08-05 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 5.2R 1.000, 1.722, 1.759 ELETTRA 5.2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.16 45.95 99.8 0.062 15.4 8.5 91331 2 7.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.16 1.22 100 0.354 4.5 7.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5J8S 1.16 42.15 86732 4573 99.73 0.12856 0.12804 0.1286 0.13827 0.1382 RANDOM 11.854
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.131 r_sphericity_free 23.298 r_dihedral_angle_4_deg 18.712 r_dihedral_angle_3_deg 12.561 r_sphericity_bonded 9.044 r_dihedral_angle_1_deg 4.672 r_rigid_bond_restr 3.755 r_long_range_B_refined 2.907 r_angle_other_deg 1.939 r_long_range_B_other 1.883
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.131 r_sphericity_free 23.298 r_dihedral_angle_4_deg 18.712 r_dihedral_angle_3_deg 12.561 r_sphericity_bonded 9.044 r_dihedral_angle_1_deg 4.672 r_rigid_bond_restr 3.755 r_long_range_B_refined 2.907 r_angle_other_deg 1.939 r_long_range_B_other 1.883 r_scangle_other 1.499 r_angle_refined_deg 1.25 r_mcbond_other 1.173 r_mcbond_it 1.124 r_mcangle_it 1.036 r_mcangle_other 1.036 r_scbond_other 0.984 r_scbond_it 0.983 r_chiral_restr 0.078 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_gen_planes_other 0.005 r_bond_other_d 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1386 Nucleic Acid Atoms Solvent Atoms 345 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling MOLREP phasing