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Fluorogen Activating Protein AM2.2 in complex with ML342
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5J74
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 20% PEG 3350
0.2M sodium nitrate
Crystal Properties Matthews coefficient Solvent content 2.24 45.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.021 α = 90 b = 72.415 β = 99.53 c = 64.562 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2013-11-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97945 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50.01 96.7 0.11 15.1 6 31546 -3 23.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 95 0.641 2.4 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5J74 2 50.01 29736 1737 96.26 0.22378 0.22147 0.2289 0.26295 0.2701 RANDOM 37.629
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 -0.23 1 -0.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.716 r_dihedral_angle_4_deg 15.238 r_dihedral_angle_3_deg 14.618 r_dihedral_angle_1_deg 6.783 r_long_range_B_refined 5.334 r_long_range_B_other 5.334 r_scangle_other 3.285 r_mcangle_it 3.02 r_mcangle_other 3.018 r_scbond_it 2.097
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.716 r_dihedral_angle_4_deg 15.238 r_dihedral_angle_3_deg 14.618 r_dihedral_angle_1_deg 6.783 r_long_range_B_refined 5.334 r_long_range_B_other 5.334 r_scangle_other 3.285 r_mcangle_it 3.02 r_mcangle_other 3.018 r_scbond_it 2.097 r_scbond_other 2.096 r_mcbond_it 1.815 r_mcbond_other 1.815 r_angle_refined_deg 1.617 r_angle_other_deg 1.172 r_chiral_restr 0.104 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_bond_other_d 0.004 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3456 Nucleic Acid Atoms Solvent Atoms 65 Heterogen Atoms 74
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling PHASER phasing