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Trypanosoma brucei methionyl-tRNA synthetase in complex with inhibitor (Chem 1856)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 1.8-2.1 M ammonium sulfate, 0.2 M sodium chloride, 0.1 M sodium cacodylate, pH 6.2-6.8, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.9 68.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.97 α = 90 b = 106.03 β = 90 c = 207.31 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944 2015-02-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 30.7 98.7 7.6 4.9 47346
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.8 30.7 45012 2279 98.53 0.20296 0.20159 0.2053 0.22986 0.2329 RANDOM 42.249
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.22 -1.8 -2.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.6 r_dihedral_angle_4_deg 14.609 r_dihedral_angle_3_deg 14.057 r_long_range_B_other 6.472 r_long_range_B_refined 6.471 r_dihedral_angle_1_deg 6.025 r_scangle_other 3.817 r_mcangle_it 3.742 r_mcangle_other 3.742 r_angle_other_deg 3.634
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.6 r_dihedral_angle_4_deg 14.609 r_dihedral_angle_3_deg 14.057 r_long_range_B_other 6.472 r_long_range_B_refined 6.471 r_dihedral_angle_1_deg 6.025 r_scangle_other 3.817 r_mcangle_it 3.742 r_mcangle_other 3.742 r_angle_other_deg 3.634 r_scbond_it 2.246 r_scbond_other 2.246 r_mcbond_it 2.205 r_mcbond_other 2.205 r_angle_refined_deg 1.347 r_chiral_restr 0.075 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_gen_planes_other 0.005 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8369 Nucleic Acid Atoms Solvent Atoms 366 Heterogen Atoms 65
Software Software Software Name Purpose REFMAC refinement PHASER phasing Aimless data scaling HKL-2000 data reduction