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structure of the core domaine of Knr4, an intrinsically disordered protein from Saccharomyces cerevisiae - WT.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 285 PEG (3000-6000) 15 - 24 % (w/v)
pH 8.0 - 9.0
Crystal Properties Matthews coefficient Solvent content 2.85 56.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.003 α = 90 b = 103.003 β = 90 c = 93.377 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-01-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.97942 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 40.25 99.7 0.04 0.999 12.7 2.6 19048 82
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.65 99.7 0.908 1 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.5 35 18066 980 97.47 0.187 0.18486 0.192 0.22614 0.2319 RANDOM 85.129
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.56 0.78 1.56 -5.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.762 r_dihedral_angle_3_deg 13.409 r_long_range_B_refined 11.118 r_long_range_B_other 11.117 r_scangle_other 10.172 r_mcangle_other 8.485 r_mcangle_it 8.484 r_dihedral_angle_4_deg 8.161 r_scbond_it 7.732 r_scbond_other 7.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.762 r_dihedral_angle_3_deg 13.409 r_long_range_B_refined 11.118 r_long_range_B_other 11.117 r_scangle_other 10.172 r_mcangle_other 8.485 r_mcangle_it 8.484 r_dihedral_angle_4_deg 8.161 r_scbond_it 7.732 r_scbond_other 7.73 r_mcbond_it 6.625 r_mcbond_other 6.621 r_dihedral_angle_1_deg 6.262 r_angle_refined_deg 1.132 r_angle_other_deg 0.882 r_chiral_restr 0.064 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3417 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SHELXDE phasing XSCALE data scaling XDS data reduction MxCuBE data collection