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Monomeric Human Cu,Zn Superoxide dismutase, loops IV and VII deleted, apo form, circular permutant P7/8
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4BCZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.2 M di-ammonium hydrogen citrate,
20 % w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.11 41.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.14 α = 90 b = 74.14 β = 90 c = 59.42 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2014-09-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-3 1 MAX II I911-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 37.1 100 0.097 14.1 7.5 6519
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.61 0.661
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4bcz 2.5 37.1 6195 304 99.95 0.1843 0.1818 0.1889 0.2354 0.2277 RANDOM 48.959
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.67 -0.67 -0.67 2.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.035 r_sphericity_free 28.881 r_sphericity_bonded 19.775 r_dihedral_angle_3_deg 14.184 r_dihedral_angle_1_deg 5.026 r_dihedral_angle_4_deg 4.581 r_mcangle_it 3.8 r_mcbond_it 2.899 r_mcbond_other 2.897 r_rigid_bond_restr 1.271
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.035 r_sphericity_free 28.881 r_sphericity_bonded 19.775 r_dihedral_angle_3_deg 14.184 r_dihedral_angle_1_deg 5.026 r_dihedral_angle_4_deg 4.581 r_mcangle_it 3.8 r_mcbond_it 2.899 r_mcbond_other 2.897 r_rigid_bond_restr 1.271 r_angle_refined_deg 0.881 r_angle_other_deg 0.598 r_chiral_restr 0.057 r_bond_refined_d 0.004 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1576 Nucleic Acid Atoms Solvent Atoms 24 Heterogen Atoms
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction iMOSFLM data reduction MOLREP phasing