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Monomeric Human Cu,Zn Superoxide dismutase, loops IV and VII deleted, apo form, circular permutant P4/5
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4BCZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 293 0.17 M ammonium sulfate, 25.5 % w/v PEG 4K, 15 % v/v Glycerol
Crystal Properties Matthews coefficient Solvent content 2.29 46.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.72 α = 90 b = 71.72 β = 90 c = 69.51 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2013-11-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-3 1 MAX II I911-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 46.36 100 0.039 29.2 6.9 56396
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.25 1.29 0.563
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4bcz 1.25 46.36 53233 2848 99.96 0.1313 0.1293 0.1696 0.1951 RANDOM 20.982
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.08 0.08 0.08 -0.25
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 53.62 r_dihedral_angle_2_deg 45.017 r_sphericity_bonded 24.168 r_dihedral_angle_4_deg 22.32 r_dihedral_angle_3_deg 11.732 r_dihedral_angle_1_deg 7.959 r_rigid_bond_restr 5.663 r_mcangle_it 5.463 r_mcbond_it 4.548 r_mcbond_other 4.544
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 53.62 r_dihedral_angle_2_deg 45.017 r_sphericity_bonded 24.168 r_dihedral_angle_4_deg 22.32 r_dihedral_angle_3_deg 11.732 r_dihedral_angle_1_deg 7.959 r_rigid_bond_restr 5.663 r_mcangle_it 5.463 r_mcbond_it 4.548 r_mcbond_other 4.544 r_angle_refined_deg 2.004 r_angle_other_deg 0.905 r_chiral_restr 0.147 r_bond_refined_d 0.022 r_gen_planes_refined 0.01 r_bond_other_d 0.006 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1586 Nucleic Acid Atoms Solvent Atoms 263 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction iMOSFLM data reduction Aimless data scaling MOLREP phasing