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Monomeric Human Cu,Zn Superoxide dismutase, loops IV and VII deleted, apo form, circular permutant P2/3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4BCZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 5 293 0.1 M MIB buffer
pH 5.0
25 % w/v PEG 1500
Crystal Properties Matthews coefficient Solvent content 2.36 47.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.31 α = 90 b = 73.31 β = 90 c = 68.68 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2014-09-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-3 1 MAX II I911-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 24 100 0.078 12.9 6.2 27738
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.63 0.63
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4BCZ 1.6 23.32 26317 1384 99.89 0.1458 0.1436 0.1447 0.1863 0.1859 RANDOM 23.238
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.13 0.13 0.13 -0.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.658 r_sphericity_free 34.805 r_sphericity_bonded 12.8 r_dihedral_angle_3_deg 10.83 r_dihedral_angle_4_deg 9.883 r_dihedral_angle_1_deg 5.929 r_mcangle_it 3.498 r_rigid_bond_restr 3.062 r_mcbond_it 2.737 r_mcbond_other 2.718
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.658 r_sphericity_free 34.805 r_sphericity_bonded 12.8 r_dihedral_angle_3_deg 10.83 r_dihedral_angle_4_deg 9.883 r_dihedral_angle_1_deg 5.929 r_mcangle_it 3.498 r_rigid_bond_restr 3.062 r_mcbond_it 2.737 r_mcbond_other 2.718 r_angle_refined_deg 1.139 r_angle_other_deg 0.716 r_chiral_restr 0.068 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1570 Nucleic Acid Atoms Solvent Atoms 192 Heterogen Atoms
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction iMOSFLM data reduction MOLREP phasing