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Monomeric Human Cu,Zn Superoxide dismutase, loops IV and VII deleted, apo form, circular permutant P1/2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4BCZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 5 293 0.1 M MIB buffer
pH 5.0
25 % w/v PEG 1500
Crystal Properties Matthews coefficient Solvent content 2.12 41.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.04 α = 90 b = 75.04 β = 90 c = 59.01 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2014-09-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-3 1 MAX II I911-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 40 100 0.095 15.2 12.2 12893
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 0.618
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4bcz 2 32.51 12221 644 99.95 0.1946 0.1927 0.1974 0.2306 0.2366 RANDOM 49.806
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.96 0.96 0.96 -3.11
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 49.725 r_dihedral_angle_2_deg 36.771 r_sphericity_bonded 32.341 r_dihedral_angle_3_deg 11.253 r_dihedral_angle_4_deg 9.748 r_rigid_bond_restr 7.113 r_dihedral_angle_1_deg 4.755 r_mcangle_it 4.112 r_mcbond_it 3.174 r_mcbond_other 3.169
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 49.725 r_dihedral_angle_2_deg 36.771 r_sphericity_bonded 32.341 r_dihedral_angle_3_deg 11.253 r_dihedral_angle_4_deg 9.748 r_rigid_bond_restr 7.113 r_dihedral_angle_1_deg 4.755 r_mcangle_it 4.112 r_mcbond_it 3.174 r_mcbond_other 3.169 r_angle_refined_deg 0.88 r_angle_other_deg 0.801 r_chiral_restr 0.056 r_bond_refined_d 0.004 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1595 Nucleic Acid Atoms Solvent Atoms 85 Heterogen Atoms
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction iMOSFLM data reduction MOLREP phasing