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Lassa virus L protein cap-snatching endonuclease. apo form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3JSB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 citrate 0.191 M
PEG 3350 4%
0.1 M Hepes pH7
0.1 M strontium chloride
2mM MnCl
Crystal Properties Matthews coefficient Solvent content 2.98 58.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.75 α = 90 b = 60.13 β = 90 c = 132.78 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-06-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.939 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 66.4 99.5 0.056 15.11 4.78 40510
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.89 0.726
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3JSB 1.85 66.39 38459 2017 99.32 0.20816 0.20531 0.2054 0.25931 0.259 RANDOM 42.225
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.41 5.64 -5.23
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 39.956 r_dihedral_angle_2_deg 33.105 r_sphericity_bonded 19.743 r_dihedral_angle_4_deg 16.594 r_dihedral_angle_3_deg 12.669 r_long_range_B_refined 5.616 r_dihedral_angle_1_deg 5.285 r_scbond_it 4.378 r_mcangle_it 3.884 r_mcbond_it 3.232
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 39.956 r_dihedral_angle_2_deg 33.105 r_sphericity_bonded 19.743 r_dihedral_angle_4_deg 16.594 r_dihedral_angle_3_deg 12.669 r_long_range_B_refined 5.616 r_dihedral_angle_1_deg 5.285 r_scbond_it 4.378 r_mcangle_it 3.884 r_mcbond_it 3.232 r_rigid_bond_restr 1.899 r_angle_refined_deg 1.478 r_chiral_restr 0.092 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2734 Nucleic Acid Atoms Solvent Atoms 198 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing