X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1D9Q 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.528140 % PEG 600 0.2 M imidazole/malate
Crystal Properties
Matthews coefficientSolvent content
2.2645.66

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 45.18α = 90
b = 70.417β = 90
c = 197.245γ = 90
Symmetry
Space GroupP 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2015-03-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.0001SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.310099.30.0670.99830.610.71553822

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1D9Q1.398.62122301634082.680.16120.159690.1908RANDOM19.237
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.080.060.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.464
r_dihedral_angle_4_deg17.8
r_dihedral_angle_3_deg14.28
r_long_range_B_refined6.971
r_long_range_B_other6.971
r_dihedral_angle_1_deg6.747
r_scangle_other4.954
r_scbond_it3.195
r_scbond_other3.183
r_mcangle_other2.833
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.464
r_dihedral_angle_4_deg17.8
r_dihedral_angle_3_deg14.28
r_long_range_B_refined6.971
r_long_range_B_other6.971
r_dihedral_angle_1_deg6.747
r_scangle_other4.954
r_scbond_it3.195
r_scbond_other3.183
r_mcangle_other2.833
r_mcangle_it2.832
r_angle_refined_deg2.317
r_mcbond_it1.81
r_mcbond_other1.807
r_angle_other_deg0.985
r_chiral_restr0.147
r_bond_refined_d0.025
r_gen_planes_refined0.012
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4863
Nucleic Acid Atoms
Solvent Atoms610
Heterogen Atoms20

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing