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Crystal structure of Bacillus subtilis BacC Dihydroanticapsin 7-dehydrogenase in complex with NADH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 6.5 291.15 0.2M Ammonium sulfate, 0.1M BIS-TRIS, pH 6.5, 25% w/v Polyethylene glycol 3350, 10% v/v Glycerol
Crystal Properties Matthews coefficient Solvent content 2.3 46.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.75 α = 90 b = 88.08 β = 106.44 c = 78.61 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2014-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54180
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.26 38.1 99.8 0.08 0.996 12.9 3.9 46073 16.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.26 2.38 98.9 0.325 3.8 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.26 38.1 43846 2205 99.81 0.20783 0.20717 0.2143 0.22097 0.2263 RANDOM 25.385
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.28 0.1 0.22 0.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.555 r_dihedral_angle_4_deg 20.331 r_dihedral_angle_3_deg 12.707 r_dihedral_angle_1_deg 5.129 r_long_range_B_refined 4.812 r_long_range_B_other 4.807 r_scangle_other 2.27 r_mcangle_it 1.976 r_mcangle_other 1.976 r_scbond_it 1.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.555 r_dihedral_angle_4_deg 20.331 r_dihedral_angle_3_deg 12.707 r_dihedral_angle_1_deg 5.129 r_long_range_B_refined 4.812 r_long_range_B_other 4.807 r_scangle_other 2.27 r_mcangle_it 1.976 r_mcangle_other 1.976 r_scbond_it 1.303 r_scbond_other 1.303 r_angle_refined_deg 1.125 r_mcbond_other 1.125 r_angle_other_deg 0.771 r_chiral_restr 0.06 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7391 Nucleic Acid Atoms Solvent Atoms 131 Heterogen Atoms 176
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing