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NMR solution structure of macro domain from Venezuelan equine encephalitis virus
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.4 mM [U-99% 15N] Veev macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE III 700 2 2D 1H-15N HSQC TROSY 0.4 mM [U-99% 15N] Veev macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE III 700 3 3D HNCACB 0.8 mM [U-99% 13C; U-99% 15N] Veev macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE III 700 4 3D HNCACB TROSY 0.8 mM [U-99% 13C; U-99% 15N] Veev macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE III 700 5 3D HN(CA)CO 0.8 mM [U-99% 13C; U-99% 15N] Veev macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE III 700 6 3D HN(CA)CO TROSY 0.8 mM [U-99% 13C; U-99% 15N] Veev macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE III 700 7 3D HNHA 0.4 mM [U-99% 15N] Veev macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE III 700 8 3D HNCO 0.8 mM [U-99% 13C; U-99% 15N] Veev macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE III 700 9 3D HN(CO)CA 0.8 mM [U-99% 13C; U-99% 15N] Veev macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE III 700 10 3D HNCA 0.8 mM [U-99% 13C; U-99% 15N] Veev macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE III 700 11 3D CBCA(CO)NH 0.8 mM [U-99% 13C; U-99% 15N] Veev macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE III 700 12 3D HBHA(CO)NH 0.4 mM [U-99% 15N] Veev macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE III 700 13 3D HCCH-TOCSY 0.8 mM [U-99% 13C; U-99% 15N] Veev macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE III 700 14 2D 1H-13C HSQC 0.8 mM [U-99% 13C; U-99% 15N] Veev macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE III 700 15 3D 1H-15N NOESY 0.4 mM [U-99% 15N] Veev macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE III 700 16 3D 1H-13C NOESY aliphatic 0.8 mM [U-99% 13C; U-99% 15N] Veev macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE III 700 17 3D 1H-13C NOESY aromatic 0.8 mM [U-99% 13C; U-99% 15N] Veev macro domain 90% H2O/10% D2O 20 mM 7 1 atm 298 Bruker AVANCE III 700
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 700
NMR Refinement Method Details Software molecular dynamics Amber
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 21 Conformers Submitted Total Number 21 Representative Model 1 (minimized average structure)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin 3.2 Bruker Biospin 2 processing TopSpin 3.2 Bruker Biospin 3 chemical shift assignment CARA 1.5.5 Keller and Wuthrich 4 peak picking XEASY Bartels et al. 5 structure calculation DYANA Guntert, Braun and Wuthrich 6 refinement Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman