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1.9 Angstrom Crystal Structure of Protein with Unknown Function from Vibrio cholerae.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 292 Protein: 7.0 mg/ml, 0.3M Sodium chloride, 0.01M HEPES (pH 7.5);
Screen: 2M Ammonium sulfate, 0.1M HEPES (pH 7.5), 2% (w/v) PEG 400, 1% P300;
Crystal Properties Matthews coefficient Solvent content 3.01 59.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.126 α = 90 b = 149.512 β = 90 c = 159.966 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD C(111) 2015-06-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.97872 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 29.41 99.9 0.067 0.067 0.873 20.3 5.2 42909 -3 28.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.93 99.8 0.586 2.9 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 29.41 40681 2188 99.6 0.18315 0.18074 0.1894 0.2292 0.2338 RANDOM 35.364
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.13 -2.39 1.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.545 r_dihedral_angle_4_deg 11.303 r_dihedral_angle_3_deg 10.408 r_long_range_B_refined 7.27 r_long_range_B_other 7.025 r_scangle_other 3.058 r_dihedral_angle_1_deg 3.032 r_mcangle_it 2.274 r_mcangle_other 2.274 r_scbond_it 2.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.545 r_dihedral_angle_4_deg 11.303 r_dihedral_angle_3_deg 10.408 r_long_range_B_refined 7.27 r_long_range_B_other 7.025 r_scangle_other 3.058 r_dihedral_angle_1_deg 3.032 r_mcangle_it 2.274 r_mcangle_other 2.274 r_scbond_it 2.002 r_scbond_other 1.99 r_mcbond_it 1.471 r_mcbond_other 1.471 r_angle_refined_deg 1.315 r_angle_other_deg 0.86 r_chiral_restr 0.082 r_gen_planes_refined 0.024 r_gen_planes_other 0.02 r_bond_refined_d 0.009 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3079 Nucleic Acid Atoms Solvent Atoms 401 Heterogen Atoms 75
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling PHENIX phasing