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Crystal structure of Dengue virus serotype 3 RNA dependent RNA polymerase bound to HeE1-2Tyr, a new pyridobenzothizole inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 HEPES pH7.5, PAA (poly acrilic acid) 20%, MgCl2 20 mM
Crystal Properties Matthews coefficient Solvent content 2.92 57.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 162 α = 90 b = 180.9 β = 90 c = 58.1 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-11-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A 0.97980 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 47 97.8 9.65 4 17202
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.08 99.4 1.8 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 3 45 16324 878 97.75 0.19444 0.19107 0.1943 0.26092 0.2596 RANDOM 64.999
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.03 5.25 -3.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.956 r_dihedral_angle_3_deg 14.479 r_dihedral_angle_4_deg 13.603 r_long_range_B_refined 8.028 r_long_range_B_other 8.027 r_mcangle_it 4.941 r_mcangle_other 4.94 r_scangle_other 4.881 r_dihedral_angle_1_deg 4.83 r_mcbond_it 2.948
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.956 r_dihedral_angle_3_deg 14.479 r_dihedral_angle_4_deg 13.603 r_long_range_B_refined 8.028 r_long_range_B_other 8.027 r_mcangle_it 4.941 r_mcangle_other 4.94 r_scangle_other 4.881 r_dihedral_angle_1_deg 4.83 r_mcbond_it 2.948 r_mcbond_other 2.948 r_scbond_it 2.818 r_scbond_other 2.818 r_angle_refined_deg 0.842 r_angle_other_deg 0.677 r_chiral_restr 0.048 r_bond_refined_d 0.004 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4707 Nucleic Acid Atoms Solvent Atoms 133 Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing